Translational diseases models and neurodegeneration
Our group, Translational Disease Models and Neurodegeneration, studies how tau and α-synuclein aggregates form, spread, and disrupt neural systems in Parkinson’s disease, Alzheimer’s disease, and frontotemporal dementias. We focus on the structural and mechanistic steps that turn normal proteins into disease-driving assemblies, and how specific mutations alter their behaviour, stability, and ability to propagate.
We develop targeted strategies that directly engage these processes, including peptide inhibitors that block the α-synuclein NAC region and compounds that interfere with the VQIVYK motif of tau. Alongside these protein-directed approaches, we investigate Bruton’s tyrosine kinase (BTK) as a modulator of neuroinflammation and test BTK inhibitors and BTK-oriented PROTACs to understand how kinase signalling shapes disease progression.
A significant aspect of our work involves linking therapeutic discovery to biomarker development. We refine and apply seed amplification assays (RT-QuIC and IP/RT-QuIC) to detect and functionally characterise pathological tau and α-synuclein seeds in patient samples, and we use these assays to evaluate the impact of candidate inhibitors under clinically relevant conditions.
Our research uses a broad experimental toolbox, including iPSC-derived neurons and glia, 3D neural cultures, organoids, and microfluidic co-culture systems. Across these platforms, our goal is clear: to translate mechanistic insights into therapies and biomarkers that meaningfully advance the early detection and treatment of neurodegenerative diseases.
- Mechanisms of protein aggregation and spreading
We study how tau and α-synuclein aggregates form, how mutations alter their structure, and how these assemblies propagate through neural systems. - Targeted modulation of disease-driving proteins
We design and evaluate peptide inhibitors and small-molecule modulators targeting disease-defining motifs such as the VQIVYK region of tau and the NAC domain of α-synuclein, alongside BTK-centered strategies including PROTAC approaches. - Functional biomarkers for early detection
We advance seed amplification assays (RT-QuIC and IP/RT-QuIC) to detect and characterize pathological tau and α-synuclein seeds in patient samples, aiming to improve diagnostic precision and therapeutic monitoring. - Human-relevant cellular and tissue models
We employ iPSC-derived neurons, 3D neural cultures, organoids, and microfluidic BBB models to recreate disease mechanisms and evaluate therapeutic interventions in physiologically meaningful settings. - Translational pharmacology and drug repurposing
We explore kinase-driven pathways, including BTK, and assess repurposed anticancer and targeted agents for their relevance to neurodegenerative disease mechanisms.
- Peptide inhibitors targeting α-synuclein seed activity
Developing and validating NAC-focused peptide inhibitors in cellular models, patient-derived seed assays, and mouse models of synucleinopathy. - Tau mutation–sensitive inhibitor profiling
Investigating how specific tau mutations alter aggregation behavior and determining which VQIVYK-targeting agents are most effective against mutation-driven forms of tau pathology. - Seed-based biomarker platforms
Applying automated immunoprecipitation and RT-QuIC workflows to analyze α-synuclein and tau seeds from clinical samples, linking seed biology to therapeutic testing. - Advanced iPSC and 3D disease models
Building and applying iPSC-derived neuronal systems, organoids, and engineered 3D co-cultures to test aggregation, spreading, neuroinflammation, and responses to targeted therapeutics. - BTK-directed therapeutic development
Designing and evaluating BTK inhibitors and BTK-oriented PROTAC degraders, and assessing their impact on neuroinflammatory signaling and aggregation-linked pathology.
| Project: | The role of tumor hypoxia in the emergence of acquired resistance to drugs aimed at microtubules |
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| Supervisors: | Das Viswanath M.Sc., Ph.D. |
| Available: | 1 |
| Intended for: | Doctoral training |
| Summary: | 1 place in full-time study |
| Project: | Generation of 3D human neuronal cultures: application to modeling CNS diseases |
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| Supervisors: | Das Viswanath M.Sc., Ph.D. |
| Available: | 1 |
| Intended for: | Master training |
| Summary: | - |
| Project: | Biochemical and cellular analysis of amyloid staining agents in models of tauopathies and synucleopathies |
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| Supervisors: | Das Viswanath M.Sc., Ph.D. |
| Available: | 1 |
| Intended for: | Master training |
| Summary: | - |
| Project: | Investigating Effects of Aggregates of Intrinsically Disordered Proteins on Microglia: Implication for Neurodegenerative Diseases |
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| Supervisors: | Das Viswanath M.Sc., Ph.D. |
| Available: | 1 |
| Intended for: | Master training |
| Summary: | - |
| Project: | Efficacy of Bruton Tyrosine Kinase Inhibitors Against Neuroinflammation in Neurodegenerative Diseases |
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| Supervisors: | Das Viswanath M.Sc., Ph.D. |
| Available: | 1 |
| Intended for: | Master training |
| Summary: | - |
| Project: | Systems approaches to understanding aging and neurodegeneration |
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| Supervisors: | Das Viswanath M.Sc., Ph.D. |
| Available: | 2 |
| Intended for: | Doctoral training |
| Project: | Role of axonal transport and pathology in neurodegeneration |
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| Supervisors: | Das Viswanath M.Sc., Ph.D. |
| Available: | 2 |
| Intended for: | Doctoral training |
| Project: | Research and development of agents for cancer, neurodegenerative and infectious diseases |
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| Supervisors: | De Sanctis Juan Bautista Ph.D., Hajdúch Marián M.D., Ph.D., Džubák Petr M.D., Ph.D., Urban Milan Ph.D., Das Viswanath M.Sc., Ph.D. |
| Available: | 5 |
| Intended for: | Doctoral training |