Drábek Jiří Ph.D.

Journals

ZHAO, Y., L. FANG, T. SHEN, S. CHOUDHARI, K. TALSANIA, X. CHEN, J. SHETTY, Y. KRIGA, B. TRAN, B. ZHU, Z. CHEN, W. CHEN, C. WANG, E. JAEGER, D. MEERZAMAN, C. LU, K. IDLER, L. REN, Y. ZHENG, L. SHI, V. PETITJEAN, M. SULTAN, T. HUNG, E. PETERS, J. DRÁBEK, P. VOJTA, R. MAESTRO, D. GASPAROTTO, S. KOKS, E. REIMANN, A. SCHERER, J. NORDLUND, U. LIJEDAHL, J. FOOX, C. MASON, C. XIAO, H. HONG, W. XIAO
Whole genome and exome sequencing reference datasets from a multi-center and cross-platform benchmark study. Scientific Data. 2021, 8(1), 296, ISSN: 2052-4463, PMID: 34753956,
FANG, L., B. ZHU, Y. ZHAO, W. CHEN, Z. YANG, L. KERRIGAN, K. LANGEBACH, M. DE MARS, K. IDLER, H. JACOB, Y. ZHENG, Y. YU, E. JAEGER, G. SCHROTH, O. ABAAN, K. TALSANIA, J. LACK, T. SHEN, S. STANBOULY, B. TRAN, J. SHETTY, Y. KRIGA, D. MEERZAMAN, C. NGUYEN, V. PETITJEAN, M. SULTAN, M. CAM, M. MEHTA, T. HUNG, E. PETERS, R. KALAMEGHAM, S. SAHRAEIAN, M. MOHIYUDDI, T. GUO, L. YAO, L. SONG, H. LAM, J. DRÁBEK, P. VOJTA, R. MAESTRO, D. GASPAROTTO, S. KOKS, E. REIMANN, A. SCHERER, J. NORDLUND, U. LILJEDAHL, R. JENSEN, M. PIROOZNIA, Z. LI, C. XIAO, S. SHERRY, R. KUSKO, M. MOOS, E. DONALDSON, Z. TEZAK, B. NING, W. TONG, J. LI, P. DUERKEN-HUGHES, C. CATALANOTTI, S. MAHESHWARI, J. SHUGA, W. LIANG, J. KEATS, J. ADKINS, E. TASSONE, V. ZISMANN, T. MCDANIEL, J. TRENT, J. FOOX, D. BUTLER, C. MASON, H. HONG, C. WANG, W. XIAO, I. SOMATIC
Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing. Nature Biotechnology. 2021, 39(9), 1151-60, ISSN: 1087-0156, PMID: 34504347,
XIAO, W., L. FANG, Y. ZHAO, J. LACK, M. GUAN, B. ZHU, E. JAEGER, L. KERRIGAN, T. BLOMQUIST, T. HUNG, M. SULTAN, K. IDLER, A. SCHERER, R. KUSKO, M. MOOS, C. XIAO, S. SHERRY, O. ABAAN, W. CHEN, X. CHEN, J. NORDLUND, U. LILJEDAHL, R. MAESTRO, M. POLANO, J. DRÁBEK, P. VOJTA, S. KOKS, E. REIMANN, B. MADALA, T. MERCER, C. MILLER, H. JACOB, T. TRUONG, A. MOSHREFI, A. NATARAJAN, A. GRANAT, G. SCHROTH, R. KALAMEGHAM, E. PETERS, V. PETITJEAN, A. WALTON, T. SHEN, K. TALSANIA, C. VERA, K. LANGEBACH, M. DE MARS, J. HIPP, J. WILLEY, J. WANG, J. SHETTY, Y. KRIGA, A. RAZIUDDIN, B. TRAN, Y. ZHENG, Y. YU, M. CAM, P. JAILWALA, C. NGUYEN, D. MEERZAMAN, Q. CHEN, B. ERNEST, U. MEHRA, R. JENSEN, W. JONES, J. LI, B. PAPAS, M. PIROOZNIA, Y. CHEN, F. SEIFUDDIN, Z. LI, X. LIU, W. RESCH, J. WANG, L. WU, G. YAVAS, C. MILES, B. NING, W. TONG, C. MASON, E. DONALDSON, S. LABABIDI, L. STAUDT, Z. TEZAK, H. HONG, C. WANG
Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencing. Nature Biotechnology. 2021, 39(9), 1141-50, ISSN: 1087-0156, PMID: 34504346,

Books & book chapters

HAJDÚCH, M., J. DRÁBEK, R. TROJANEC
Biologická léčiva: Teoretické základy a klinická praxe, 1. vyd, Praha, Grada Publishing, 2012, 219 s, Dedication: BIOMEDREG CZ.1.05/2.1.00/01.0030, ISBN: 978-80-247-3727-0,
HAJDÚCH, M., J. DRÁBEK, R. TROJANEC
Význam biomarkerů pro indikaci cílené biologické léčby v onkologii, 1. vyd, Praha, Grada Publishing, 2012, 2.8, 137-149, Dedication: BIOMEDREG CZ.1.05/2.1.00/01.0030, ISBN: 978-80-247-3727-0,
DRÁBEK, J.
Design primerů pro polymerázovou řetězovou reakci (PCR), 1.vyd, Olomouc, Univerzita Palackeho v Olomouci, 2012, 5, 45-56, Dedication: CZ.1.07/2.3.00/09.0089, ISBN: 978-80-244-3199-4,

Doctoral mentorship

Tzu-Hsuan Cheng

Cell line authentication using PCR High Resolution Melting Analysis

Status: Ongoing from 2016 to 2016.
Kotková Lucie

Genetic and Epigenetic Biomarkers in cancer

Status: Ongoing from 2017.
Harnádková Natália

Genetics and epigenetics markers in oncology

Status: Ongoing from 2024.

Master mentorship

Hrušková Eva B.Sc.

Testing the temperature uniformity of the thermocyclers using melting temperature of the same amplicon

Status: Graduated from 2010 to 2015.
Vaňková Veronika

Optimization of mycoplasma detection system based on Recombinase polymerase amplification (RPA)

Status: Graduated from 2018 to 2020.
Crlíková Hana

Stabilisation of PCR reagents for storing at room temperature

Status: Graduated from 2015 to 2016.

Bachelor mentorship

Svobodová Vendula

Hereditary cancer syndromes and their molecular genetics detection

Status: Graduated from 2013 to 2014.
Kadličková Dominika

DNA profiling by high resolution melting of microsatellite amplicons

Status: Graduated from 2015 to 2017.
Bebčáková Ema

Authentication of CFTR transgenic mice by PCR

Status: Ongoing from 2023.

Open positions

Project: Genetic and epigenetic biomarkers of cancer diseases
Supervisors: Slavkovský Rastislav Ph.D., Džubák Petr M.D., Ph.D., Hajdúch Marián M.D., Ph.D., Drábek Jiří Ph.D.
Available: 3
Intended for: Doctoral training
Summary: 3 places in full-time or combined form of study
Project: Epigenetic and genetic biomarkers of phenotypic traits
Supervisors: Drábek Jiří Ph.D.
Available: 1
Intended for: Doctoral training
Summary: 1 place in full-time study
Project: Genetic and epigenetic biomarkers in health and disease
Supervisors: Slavkovský Rastislav Ph.D., Džubák Petr M.D., Ph.D., Hajdúch Marián M.D., Ph.D., Drábek Jiří Ph.D., Koudeláková Vladimíra Ph.D.
Available: 5
Intended for: Doctoral training
Project: Bioinformatic sequence extraction of short tandem repeats from whole-genome sequencing data for sample re-identification
Supervisors: Drábek Jiří Ph.D.
Available: 1
Intended for: Bachelor training
Summary: -
Project: Bioinformatic sequence extraction of short tandem (microsatellite) repetitions from whole-genome sequencing data for sample re-identification
Supervisors: Drábek Jiří Ph.D.
Available: 1
Intended for: Bachelor training
Summary: -
Project: Bioinformatic determination of a related grapevine grown by Gregor Mendel based on data from microsatellite repeat genotyping and comparison with available databases
Supervisors: Drábek Jiří Ph.D.
Available: 1
Intended for: Bachelor training
Summary: -
Project: Software for calculation of the strength of genetic evidence for paternity of hydatidiform moles
Supervisors: Drábek Jiří Ph.D.
Available: 1
Intended for: Bachelor training
Summary: -
Project: Bioinformatic differentiation of cytosine methylation in individual subfamilies of Alu repeats after bisulfitation reaction and massively parallel sequencing
Supervisors: Drábek Jiří Ph.D.
Available: 1
Intended for: Bachelor training
Summary: -
Project: Epigenetic biomarkers
Supervisors: Drábek Jiří Ph.D.
Available: 1
Intended for: Master training
Summary: -
Project: Genetic biomarkers
Supervisors: Drábek Jiří Ph.D.
Available: 1
Intended for: Master training
Summary: -
Project: Bioinformatic differentiation of individual subfamilies of Alu repetitions after bisulfitation reaction and massively parallel sequencing
Supervisors: Drábek Jiří Ph.D.
Available: 1
Intended for: Bachelor training
Summary: -
Project: Bioinformatic determination of kinship of grapevine grown by Gregor Mendel based on data from microsatellite DNA profiling compared with available databases
Supervisors: Drábek Jiří Ph.D.
Available: 1
Intended for: Bachelor training
Summary: -
Project: Programmed software for calculating the likelihood ratio (strength of genetic evidence) in determining the paternity of hydatidiform moles
Supervisors: Drábek Jiří Ph.D.
Available: 1
Intended for: Bachelor training
Summary: -
Project: Genetic biomarkers
Supervisors: Drábek Jiří Ph.D.
Available: 1
Intended for: Master training
Project: Epigenetic biomarkers
Supervisors: Drábek Jiří Ph.D.
Available: 1
Intended for: Master training