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Translational diseases models and neurodegeneration

Laboratory of Experimental Medicine
Junior research group

Our group, Translational Disease Models and Neurodegeneration, studies how tau and α-synuclein aggregates form, spread, and disrupt neural systems in Parkinson’s disease, Alzheimer’s disease, and frontotemporal dementias. We focus on the structural and mechanistic steps that turn normal proteins into disease-driving assemblies, and how specific mutations alter their behaviour, stability, and ability to propagate.

We develop targeted strategies that directly engage these processes, including peptide inhibitors that block the α-synuclein NAC region and compounds that interfere with the VQIVYK motif of tau. Alongside these protein-directed approaches, we investigate Bruton’s tyrosine kinase (BTK) as a modulator of neuroinflammation and test BTK inhibitors and BTK-oriented PROTACs to understand how kinase signalling shapes disease progression.

A significant aspect of our work involves linking therapeutic discovery to biomarker development. We refine and apply seed amplification assays (RT-QuIC and IP/RT-QuIC) to detect and functionally characterise pathological tau and α-synuclein seeds in patient samples, and we use these assays to evaluate the impact of candidate inhibitors under clinically relevant conditions.

Our research uses a broad experimental toolbox, including iPSC-derived neurons and glia, 3D neural cultures, organoids, and microfluidic co-culture systems. Across these platforms, our goal is clear: to translate mechanistic insights into therapies and biomarkers that meaningfully advance the early detection and treatment of neurodegenerative diseases.

  • Mechanisms of protein aggregation and spreading
    We study how tau and α-synuclein aggregates form, how mutations alter their structure, and how these assemblies propagate through neural systems.
  • Targeted modulation of disease-driving proteins
    We design and evaluate peptide inhibitors and small-molecule modulators targeting disease-defining motifs such as the VQIVYK region of tau and the NAC domain of α-synuclein, alongside BTK-centered strategies including PROTAC approaches.
  • Functional biomarkers for early detection
    We advance seed amplification assays (RT-QuIC and IP/RT-QuIC) to detect and characterize pathological tau and α-synuclein seeds in patient samples, aiming to improve diagnostic precision and therapeutic monitoring.
  • Human-relevant cellular and tissue models
    We employ iPSC-derived neurons, 3D neural cultures, organoids, and microfluidic BBB models to recreate disease mechanisms and evaluate therapeutic interventions in physiologically meaningful settings.
  • Translational pharmacology and drug repurposing
    We explore kinase-driven pathways, including BTK, and assess repurposed anticancer and targeted agents for their relevance to neurodegenerative disease mechanisms.
  • Peptide inhibitors targeting α-synuclein seed activity
    Developing and validating NAC-focused peptide inhibitors in cellular models, patient-derived seed assays, and mouse models of synucleinopathy.
  • Tau mutation–sensitive inhibitor profiling
    Investigating how specific tau mutations alter aggregation behavior and determining which VQIVYK-targeting agents are most effective against mutation-driven forms of tau pathology.
  • Seed-based biomarker platforms
    Applying automated immunoprecipitation and RT-QuIC workflows to analyze α-synuclein and tau seeds from clinical samples, linking seed biology to therapeutic testing.
  • Advanced iPSC and 3D disease models
    Building and applying iPSC-derived neuronal systems, organoids, and engineered 3D co-cultures to test aggregation, spreading, neuroinflammation, and responses to targeted therapeutics.
  • BTK-directed therapeutic development
    Designing and evaluating BTK inhibitors and BTK-oriented PROTAC degraders, and assessing their impact on neuroinflammatory signaling and aggregation-linked pathology.
ALLADI, C., I. KOZLOV, P. SKOUPILOVÁ, L. MALINA, S. ROY, V. DAS
Structural and functional insights into the selective inhibition of mutant tau aggregation by purpurin and oleocanthal in frontotemporal dementia. Protein Science. 2025, 34(9), e70240, ISSN: 0961-8368, PMID: 40862394,  PDF.
DAS, V., L. DIOMEDE, L. MALINA, M. MOSCONI, N. ANNADURAI
Intrinsic aggregation and propagation of unmodified tau peptides: R2R3 as a minimal model system. Biophysical Journal. 2025, ISSN: 0006-3495 , PMID: 40515399,
DEVIATOV, A., I. KOZLOV, V. DAS
Differentiation of SH-SY5Y Cells into Cortical Neuron-like Cells for Tauopathy Modeling and Seeding Assays. Molecular Neurobiology. 2025, ISSN: 0893-7648, PMID: 40467940,  PDF.
Project: The role of tumor hypoxia in the emergence of acquired resistance to drugs aimed at microtubules
Supervisors: Das Viswanath M.Sc., Ph.D.
Available: 1
Intended for: Doctoral training
Summary: 1 place in full-time study
Project: Generation of 3D human neuronal cultures: application to modeling CNS diseases
Supervisors: Das Viswanath M.Sc., Ph.D.
Available: 1
Intended for: Master training
Summary: -
Project: Biochemical and cellular analysis of amyloid staining agents in models of tauopathies and synucleopathies
Supervisors: Das Viswanath M.Sc., Ph.D.
Available: 1
Intended for: Master training
Summary: -
Project: Investigating Effects of Aggregates of Intrinsically Disordered Proteins on Microglia: Implication for Neurodegenerative Diseases
Supervisors: Das Viswanath M.Sc., Ph.D.
Available: 1
Intended for: Master training
Summary: -
Project: Efficacy of Bruton Tyrosine Kinase Inhibitors Against Neuroinflammation in Neurodegenerative Diseases
Supervisors: Das Viswanath M.Sc., Ph.D.
Available: 1
Intended for: Master training
Summary: -
Project: Systems approaches to understanding aging and neurodegeneration
Supervisors: Das Viswanath M.Sc., Ph.D.
Available: 2
Intended for: Doctoral training
Project: Role of axonal transport and pathology in neurodegeneration
Supervisors: Das Viswanath M.Sc., Ph.D.
Available: 2
Intended for: Doctoral training
Project: Research and development of agents for cancer, neurodegenerative and infectious diseases
Supervisors: De Sanctis Juan Bautista Ph.D., Hajdúch Marián M.D., Ph.D., Džubák Petr M.D., Ph.D., Urban Milan Ph.D., Das Viswanath M.Sc., Ph.D.
Available: 5
Intended for: Doctoral training
IMTM, LEM, POSTDOCTORAL FELLOW, STAFF
DOCTORAL STUDENT, IMTM, LEM, MASTER STUDENT, STAFF
DOCTORAL STUDENT, IMTM, LEM